Meeting Notes 20090805 Phone meeting (Gwen & Paea)
From Nemo
8/05/09
Phone call: Gwen & Paea
TODO Aug 6-12, 2009
1. Gwen will do the following (by Thurs 8/6/2009):
-create a new file called NEMO_backend.owl, which contains BFO, RO, and NEMO_annotation_properties
-modify NEMO_spatial, _temporal, _functional, _data, and _ERP as follows:
a) delete imports and replace with NEMO_backend.owl
b) check that 5 NEMO owl modules are orthogonal (no overlapping concepts)
c) check that all NEMO concepts have numeric IDs assigned (update 'NEMOlex-07042009_gf_v1.xlsx')
2. Gwen will hand off 7 owl files to Paea, who will do the following (by Wed 8/12/2009):
-Fix the namespace for concepts in each module (concepts in NEMO_spatial should all have namespace=NEMO_spatial, etc.)
-Fix classes _limbo & _deprecated: these classes should belong to NEMO_annotation_properties
-Change URI for all fields (ontology meta-data, classes, etc.) to nemo.nic.uoregon.edu
-Create a NEMO.owl file that serves as our "top" ontology for NEMO
3. Gwen to check 8 owl files, including top-level NEMO.owl. After verifying, she will submit as v0.85 to BioPortal (by Wed 8/13/2009)
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THEN, we have these outstanding issues to resolve:
-- (Paea and Gwen) Get a tutorial on sourceforge from Jason. GOAL:
get our files organized, available, version-controlled, and
forum-tracked online and learn how to maintain it ourselves. Develop
and document those procedures. Make it easy for partners to submit
and track TODO requests.
-- (Paea or Gwen) Look into Protege auto-assigned numeric ids. Does
this feature exist? Formally request it, if not?
-- (Paea or Dejing) Look into an online tool for consortium members
to view and comment on parts of an ontology. Is collaborative Protege
such a tool? (Dejing may know, he went to that workshop.)
-- (Gwen) Consider version tracking at the term-level using new
Protege/OWL2 features. What value/cost is added?
-- (Gwen) Look into MIREOT. What value/cost is added by adopting
this importing strategy?
Uploading latest versions of NEMO owl files to sourceforge... See also #9
- email to Jason & Paea about Tues meeting?
- Versioning on file level